Compilation Instructions

From Zori Wiki

Zori compilation instructions

(Mac OS 10.5 (http://zori.aspuru.com/compilation.html#MacOSX5))

Obtaining Zori

Currently, the only way of obtaining Zori is to be a collaborator or developer. Eventually, when it will be released, you will be able to download it from this site, after filling a questionaire.

If you are a collaborator or developer, you will have CVS access, and these are the steps to obtain the code:

export CVSROOT=:pserver:user@sunsite.dk:/pack/cvsroots/zori

cvs login

cvs get zori

Zori will be downloaded from the CVS into a subdirectory called zori

Paths

We assume thay you will install everything in the $ZORI_HOME directory, and therefore have your environment variables set as:

export ZORI_HOME=$HOME/zorihome

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ZORI_HOME/lib

export PATH=$PATH:$ZORI_HOME/bin/

export ACLOCAL_FLAGS=$ACLOCAL_FLAGS:" -I $ZORI_HOME/share/aclocal "

Requirements

The following� packages� (RPM, dpkg and/or source installations) need to be installed:

There is a directory where we collected some of the required files listed above . You can access it via http from this link (http://zori.aspuru.com/zori_files/).

Message Passing Interface

An implementation of MPI, such as LAM (http://www.lam-mpi.org/) or MPICH (http://www-unix.mcs.anl.gov/mpi/mpich/) is required for compilation. In this document, we assume you are using LAM.

Be warned that the lam distributed with Fedora core 2 was broken.

Compilation

Here are the steps that hopefully will lead to a succesful Zori compilation:

cd zori

aclocal

aclocal -I $ZORI_HOME/share/aclocal

Then, you need to autogenerate the configuration:

chmod 755 ./autogen.sh

# If you have hdf5-1.6.4 or higher:

CC="mpicc -I $ZORI_HOME/include -L$ZORI_HOME/lib" ./autogen.sh  \
--prefix=$ZORI_HOME --enable-debug

# If you have hdf-1.6.2:

CC="mpicc -DHDF_162 -I$ZORI_HOME/include -L$ZORI_HOME/lib" ./autogen.sh  \
--prefix=$ZORI_HOME --enable-debug --enable-hdf162

To use glib-1.2, append --enable-glib1 to these instructions.

Look for any fatal errors from the configuration procedure. It might complain that some of the features in configure.in are deprecated. That is normal.

 If you want to compile Zori with Zopt enabled get and compile Opt++ fisrt. Refer to the Compiling OPTplusplus 

section of the manual for instructions. 

Export the path for Opt++, in this case we are considering it was installed in $ZORI_HOME:

export  OPTPP_BASE=$ZORI_HOME/OPT++.2.1.rao-mac/

 Then compile using:

CC="mpicc -I $ZORI_HOME/include -L$ZORI_HOME/lib" \
CXX="mpiCC -I $ZORI_HOME/include -L$ZORI_HOME/lib"./autogen.sh  \
--prefix=$ZORI_HOME --enable-debug --enable-optpp

Follow the instructions above to specify particular versions of HDF and GLib.

The code should be compiled with

make

Feel free to contact the developers if you have any questions.

Platform-specific instructions

MacOSX 10.3.2 (Panther)

• Obtain Fink (http://fink.sourceforge.net) and install it. Yes. Don't think, just get it
• Use Fink Commander to install the following packages (The version that we used is in parenthesis. Anything earlier than that is not recommended)
  
  • gettext����������������� (0.10.40)
    
  • gettext-bin
  • gettext-devel
  • popt��������������������� (1.7.1)
  • popt-shlibs
  • glib2�������������������� (2.2.3)
  • glib2-dev
  • glib2-shlibs
  • libxml2���������������� (2.2.4)
    
  • libxml2-bin
  • libxml2-shlibs

• Make sure you have the default paths (http://zori.aspuru.com/compilation.html#Paths) set, but also modify AC_LOCAL_FLAGS by running the following command:

export ACLOCAL_FLAGS=$ACLOCAL_FLAGS:" -I /sw/share/aclocal"

• Download and install manually the following packages.
  

Type this horrible, yet powerful UNIX command
��� ��

CC="mpicc -I${ZORI_HOME}/include -I/sw/include" \
LDFLAGS="-L${ZORI_HOME}/lib -L/sw/lib ${LDFLAGS} " ./autogen.sh \
--prefix=${ZORI_HOME} --enable-debug

make

NOTE: Some of these steps appear in the unsupported script� zmake_osx located in the
Required files (http://zori.aspuru.com/zori_files),


NOTE: If you are compiling on the IBM SP, this post-compilation modification is important for runs at large concurrencies:

After compiling,
Run:

change_maxdata

Specify your compiled zori binary
and then use the magic number of 7.

MacOSX 10.4.2 (Tiger) also works for 10.3.9 (Panther)

• Obtain Fink (http://fink.sourceforge.net) and install it. Yes. Don't think, just get it
• Use Fink Commander to install the following packages (The version that we used is in parenthesis. Anything earlier than that is not recommended)
  
  • gettext ..................(0.10.40-19)
    
  • gettext-bin
  • gettext-dev
  • gettext-tools
  • popt ......................(1.7-5)
  • popt-shlibs
  • glib2 .....................(2.4.6-6)
  • glib2-dev
  • glib2-shlibs
  • libxml2 ..................(2.6.17-1)
    
  • libxml2-bin
  • libxml2-shlibs
  • lammpi ..................(7.0.6-11)
    
  • lammpi-dev
  • lammpi-shlibs
  • pkgconfig ..............(0.15.0-2)
    
  • glib ........................(1.2.10-18)
    
  • glib-shlibs

• Make sure you have the default paths (http://zori.aspuru.com/compilation.html#Paths) set, but also modify AC_LOCAL_FLAGS by running the following command:

export ACLOCAL_FLAGS=$ACLOCAL_FLAGS:" -I /sw/share/aclocal"

• Download and install manually the following packages.
  

On older version of the Zori source code Option -o in zori is not supported for MAC OS. Either you must use the --enable-macosx option or you must comment it out in zmain.c (lines 115-134 inclusive, put instead a comment like this: m_message("-o option not supported for mac");) but neither should be required for more up to date source code.

Type this horrible, yet powerful UNIX command (have the different libraries localized, this is an example with gsl installed in ~/wkspace)

CC="mpicc -I${ZORI_HOME}/include -I/sw/include -I/sw/include/glib-2.0 -I/sw/include/libxml2 \     
-I$HOME/wkspace/gsl-1.5/cblas" LDFLAGS="-L${ZORI_HOME}/lib -L/sw/lib \
-L/sw/lib/glib-2.0 ${LDFLAGS}" ./autogen.sh --prefix=${ZORI_HOME}  --enable-macosx --enable-debug

cd src
make

This will get you zori and zavg. There is no support at the moment for zopt.

MacOSX 10.5 (Leopard)

Will attempt to compile shortly on new OS.